Introducing CosMx® Human Whole Transcriptome Panel

Available 2025


Reveal complete biology with subcellular whole transcriptome imaging for uncharted discoveries

What if you could uncover the story of every pathway, every cell and every transcript exactly where they belong? For the first time, image the whole transcriptome of every single cell with spatial context. With CosMx WTX, project complete pathway biology in space, map every cell-to-cell interaction at the individual transcript level, and discover the unknown and unexpected all with best-in-class sensitivity and genomic breadth within a single intact FFPE tissue section. CosMx WTX delivers disruptive discoveries at subcellular resolution so every single cell contributes to your tissue’s full story.

  • Project complete pathway biology
  • Map every cell-to-cell interaction
  • Chart every pathway, cell and transcript
  • Uncover every tissue’s hidden story

How it Works

Move beyond near single-cell resolution profilers and unlock the Next Generation of Spatial Single-Cell Biology with CosMx Human Whole Transcriptome. Discover new, rare cell types with millions of cells per experiment without the inefficiencies and limitations of scRNA-seq. CosMx SMI enables researchers to see what they’ve been missing out on in FFPE and fresh frozen samples and expands spatial applications to more than just cell typing. 

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Covers > 18,000 RNA targets for full coverage across all protein coding genes

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Best-in-class, multimodal cell segmentation methods for accurate downstream data analysis

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Compatible with a wide range of tissues including FFPE and fresh frozen to provide full coverage for single-cell spatial biology

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Available for human samples with added benefit of customization options

Human Pancreas Dataset

To showcase the power of the CosMx Human Whole Transcriptome panel, we’ve assembled a comprehensive dataset using it on a human pancreas. This dataset was generated using a prototype version of the panel and related software, and the performance of the new capability is expected to improve in the commercial version.

CosMx Human Whole Transcriptome Human Pancreas Dataset visualization overview

Stay Informed

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Publications & Posters

Spatial Single-Cell Whole Transcriptome Profiling of Human Tissues and Fixed Cells Using Spatial Molecular Imaging – AGBT 2024